AlphaPulldown features database

Precomputed input features for model organisms, so you do not have to run the MSA and template search yourself. See the wiki instructions for downloading whole proteomes or individual features via mc.

AlphaFold2 input features

16 organisms · 326,100 features · 486.5 GiB. Pickled feature dictionaries (.pkl.xz) with their metadata, for AlphaPulldown 1.x/2.x.

AlphaFold3 input features

2 organisms · 7,132 features · 15.7 GiB. AlphaFold3 JSON inputs (*_af3_input.json.xz) with MSAs and templates embedded.